rs6201823 SNP Detail

Summary

• ID
  rs6201823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78876176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAATGCA GACAGGATTA
  TCTTGGTTTG GAAAGCTTTT GGCAGAAGTA CTTTTAAACA ATTAACTTAA CCAAAACATA
  ATGAAAATGT TAACAGAATA TAGCAAAATA CTAGCATACA TTTCCTGTAC TCCATTAAAA
  AATACATACA GTGTTTTTCA TTCATATTTT ATGACTAAAA TTTTAGTGAT GGAACTCATA
  M
  GATGAAATAG TGTTGAAAAT CACTTATTGC TCTTGCAGGA AGACTCAGAT TTTGTTCCCC
  GGGTACACAA TGTACAACCT CCAAACCACC GAAAATTCTA ATAATGAAAT ATCTGACACA
  TTCTGGCCAC CATCAACAAC TTTGCAAATG CATACATACA CAGCATACCA CACACACACA
  CACACACACA CACACACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8607464	WI_WGS_6_79796032	WI	MOUSE	f	SNP	C	A
ss321832864	CHEV_6_78849187	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6201823					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78876176 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	859 bp proximal
Rr632521	regulatory region 632521	942 bp proximal