rs6201802 SNP Detail

Summary

• ID
  rs6201802
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78876165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTAATT AGCTTAATGC
  AGACAGGATT ATCTTGGTTT GGAAAGCTTT TGGCAGAAGT ACTTTTAAAC AATTAACTTA
  ACCAAAACAT AATGAAAATG TTAACAGAAT ATAGCAAAAT ACTAGCATAC ATTTCCTGTA
  CTCCATTAAA AAATACATAC AGTGTTTTTC ATTCATATTT TATGACTAAA ATTTTAGTGA
  K
  GGAACTCATA CGATGAAATA GTGTTGAAAA TCACTTATTG CTCTTGCAGG AAGACTCAGA
  TTTTGTTCCC CGGGTACACA ATGTACAACC TCCAAACCAC CGAAAATTCT AATAATGAAA
  TATCTGACAC ATTCTGGCCA CCATCAACAA CTTTGCAAAT GCATACATAC ACAGCATACC
  ACACACACAC ACACACACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8607443	WI_WGS_6_79796021	WI	MOUSE	f	SNP	T	G
ss321832863	CHEV_6_78849176	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6201802					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78876165 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	870 bp proximal
Rr632521	regulatory region 632521	953 bp proximal