rs6201390 SNP Detail

Summary

• ID
  rs6201390
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130807264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGACCAACAG
  AAGGAAGTGG AACCGAAGGT CACAGAAAGA GCTGCACAAA CCTCACTCGG TGAGTTACTA
  ATACAAGGGG ACATGATGTT AGGGTAGCAA GGAGGATGNG GGTCGATCTT GGAGTTGTTA
  TGAGGATAAG TGAGGGGTGA ATATGATATA GATATANTGT GCAAAATTCT CAAAGAATGA
  GCAAAAACAA NGTAATTTTA AAGATACAAA AGCAATCGAT TTCATACGAA AGAAAAGAAA
  W
  TTCCAAGCAT AGACCAGAGC ACAGCAGAGT CTAAATAGGG CAAGACATTT GGGGACTTTG
  GGACAAATCT TGGCATTTAT GGTGTCAAAA CAGGATCACT GAGAAGTCTG GCACCGGTGC
  AGGAAGGGAA ACAGGTGCTT GGTGTTTGAG AGACCTGTGA ATGTGCCTCA AAAGTTACAC
  ACTCAGGAAA TCTCCCTAGA AAGTCCTAGA GAACCTACAC TTGTGTGGAC TCTAAATTTT
  TCTTTTAAGT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8607030	WI_WGS_3_131569648	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6201390					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130807264 () rs orientation: forward

Symbol	Name	Function Class
Rr585250	regulatory region 585250	365 bp proximal