rs6200949 SNP Detail

Summary

• ID
  rs6200949
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130807214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGTGATGNG
  ATTGTGGGGG TCGGAAAGTC TTCACAGACC AACCTGATCC TGACCAACAG AAGGAAGTGG
  AACCGAAGGT CACAGAAAGA GCTGCACAAA CCTCACTCGG TGAGTTACTA ATACAAGGGG
  ACATGATGTT AGGGTAGCAA GGAGGATGNG GGTCGATCTT GGAGTTGTTA TGAGGATAAG
  TGAGGGGTGA ATATGATATA GATATANTGT GCAAAATTCT CAAAGAATGA GCAAAAACAA
  S
  GTAATTTTAA AGATACAAAA GCAATCGATT TCATACGAAA GAAAAGAAAN TTCCAAGCAT
  AGACCAGAGC ACAGCAGAGT CTAAATAGGG CAAGACATTT GGGGACTTTG GGACAAATCT
  TGGCATTTAT GGTGTCAAAA CAGGATCACT GAGAAGTCTG GCACCGGTGC AGGAAGGGAA
  ACAGGTGCTT GGTGTTTGAG AGACCTGTGA ATGTGCCTCA AAAGTTACAC ACTCAGGAAA
  TCTCCCTAGA                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606588	WI_WGS_3_131569598	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200949					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130807214 () rs orientation: forward

Symbol	Name	Function Class
Rr585250	regulatory region 585250	415 bp proximal