rs6200501 SNP Detail

Summary

• ID
  rs6200501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96571783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTTTAT TTCACAACTG
  TGTTCCTTCT GGCCACGTTC CTCCTTAGGG ATTATTTTTC ATATCTGCAA AGCAATTCTT
  TAGAACGAAT GTCAGTGGCT GCTGCTGAGC CTTGGGCAAC AGCCTCAGTG TGAATTATCT
  GTGAAGTTGA AAACTAGAAG AACACATTGG AATTCAACCT GGAGAATATC AAGTCATAAT
  R
  AAAACTCTAA AAGTATTATT ATTGTTTCTA AAAGTGCATT CAGACAACAC CGAACAGCAC
  CCAAGAGCAG TGATTTGGAA AATTCACTGG AAATTTGGTT GCCAGCACAT ATGAGATAGG
  ACAGCTTTGT ATTATAATAC CCTCTTGTGG TCATAATGTG AAACTACAAA ACAAGCCATA
  TTCCTTAGAT GCTGGAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8606138	WI_WGS_4_94437718	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200501					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96571783 () rs orientation: forward

Symbol	Name	Function Class
Rr595521	regulatory region 595521	10 bp proximal
Rr595522	regulatory region 595522	134 bp proximal