rs6200412 SNP Detail

Summary

• ID
  rs6200412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132244471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGTTTAT GTGCCTGTGT
  GTGACCCGAT GAGCACAAGG TGCCCTCAGA GGCCTCTGCT ACACGAGACC TTGTCTTTTT
  TTTTTTTTAA AGATTTGTTT ATTGGGGGCT GGAGAGATGG CTCAGCGGTT AAGAGCACTG
  ACTGCTCTTC CAAAGGTCCT GAGTTCAAAT CCCAGCAACC ACATGGTGGC TCACAACCAT
  Y
  CGTAATGAGA TCTGATGCCC TCTTCTGGAG TGTCTGAGGA CAGCTACAGT ATATTTACAT
  ATAATAATAA AAAAAAAAGA TTTGTTTATT ATTATATCTA AGGACCTTCG GAAGAGCAGT
  CGGTGCTCTT AATCACTGAG CCATCTCTCC AGCCCGAGAC CTTGTCTTAA CAAAAAACAT
  TTGATTTTTC ACCTAGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss8606048	WI_WGS_4_130080853	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs6200412					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132244471 () rs orientation: forward

Symbol	Name	Function Class
Gm68741	predicted gene, 68741	within coordinates
n-TAagc8	nuclear encoded tRNA alanine 8 (anticodon AGC)	1081 bp downstream
Rr377207	regulatory region 377207	845 bp downstream
Rr600996	regulatory region 600996	1870 bp distal
Rr600998	regulatory region 600998	1132 bp distal
Rr600999	regulatory region 600999	614 bp proximal
Tssr39372	transcription start site region 39372	1332 bp downstream
Tssr43681	transcription start site region 43681	1726 bp upstream