rs6200253 SNP Detail

Summary

• ID
  rs6200253
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30201646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTAAGA GGCTCTGACT
  AGTCAACTGT CTGCAAGGAA AAGTATCAGC ACTGACTGGG AACCCACTAG AAATGTAGAC
  CTATCAGCTC CCACTTTCAG ACTGAGAGCC TGGGTTTTAT AGGGTCTTCA GGTGAGTCTC
  AGACAAGACA CACTCCGAAT CTCATGGTGT AGAAGGTGGC CCAGGCTCTT TAACGCACTT
  S
  TTAGAATTTC CATTATTTTC CTCCATAAAA CCCAGCAAAA TATGCAAGTT GGTTATAAGC
  TGTAGCTATC ATAACCTATT GTGAACTGGA AAGGGCAACT AGACAGAGGT AAGGTCATCT
  TGTCCTTGTC TGATAAAGCA GACACTTTGT GCAACACTCT TTGAGCCCTT TGTGTGGAAA
  GTTCAAAGGT ACACATTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8605889	WI_WGS_3_29960442	WI	MOUSE	f	SNP							G		C
ss49570900	NES12879004	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6200253					SNP	G	G	G	G	G	G	G	C	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570900	NES12879004	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30201646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574727	regulatory region 574727			1269 bp proximal