rs6200052 SNP Detail

Summary

• ID
  rs6200052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96571744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGGCAAATTG
  AGACCTGGGG GACAAACATT TTTCCAAGTG ATCTAACCAT TTAGTGGCGA AGACAGGATT
  TGGACACAAT GCTATCTAGC TATTTTTATT TCACAACTGT GTTCCTTCTG GCCACGTTCC
  TCCTTAGGGA TTATTTTTCA TATCTGCAAA GCAATTCTTT AGAACGAATG TCAGTGGCTG
  CTGCTGAGCC TTGGGCAACA GCCTCAGTGT GAATTATCTG TGAAGTTGAA AACTAGAAGA
  R
  CACATTGGAA TTCAACCTGG AGAATATCAA GTCATAATNA AAACTCTAAA AGTATTATTA
  TTGTTTCTAA AAGTGCATTC AGACAACACC GAACAGCACC CAAGAGCAGT GATTTGGAAA
  ATTCACTGGA AATTTGGTTG CCAGCACATA TGAGATAGGA CAGCTTTGTA TTATAATACC
  CTCTTGTGGT CATAATGTGA AACTACAAAA CAAGCCATAT TCCTTAGATG CTGGAAATGA
  GCTTTTCCTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8605687	WI_WGS_4_94437679	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6200052					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96571744 () rs orientation: forward

Symbol	Name	Function Class
Rr595521	regulatory region 595521	49 bp proximal
Rr595522	regulatory region 595522	173 bp proximal