rs6199857 SNP Detail

Summary

• ID
  rs6199857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130806972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATATTTACG GGCAGAGCTA
  ATGGAAATGA AATTCTGAGT TTGGTTTGAT CTGTGAGTTG CTTAAATTGG TTCTGCCTTT
  TCCCTCCGCC AGCCTCACGG CCCTGGGGAA AACCAAGGCT ACTCAACTCC AACACGGAAC
  AGCTCACCTC AGTGCCACTT CAGGGACCAA GGAGGAGAGA GGGAGGCAGG GGGTGTGATG
  Y
  GATTGTGGGG GTCGGAAAGT CTTCACAGAC CAACCTGATC CTGACCAACA GAAGGAAGTG
  GAACCGAAGG TCACAGAAAG AGCTGCACAA ACCTCACTCG GTGAGTTACT AATACAAGGG
  GACATGATGT TAGGGTAGCA AGGAGGATGG GGGTCGATCT TGGAGTTGTT ATGAGGATAA
  GTGAGGGGTG AATATGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8605492	WI_WGS_3_131569356	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199857					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130806972 () rs orientation: forward

Symbol	Name	Function Class
Rr585250	regulatory region 585250	657 bp proximal