rs6199619 SNP Detail

Summary

• ID
  rs6199619
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32458295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGTTGAA GTTGCTCCTT
  AGAGCTATAC CATACAAAGA AAGTCAGAGA TATTTGCTAT CCTCTTTTAT ATTTTCTCCT
  GCTGTATAAA AAGCAAACAA ACAGTCTACA GGGTCTGGGG AGTAGTGAAG AGTGCATGGC
  ATGCAAGCAG GAGGACGTGG GTTCAGATTC CCAGCAGCCA TGTTAAAAAA CTGGGCATGG
  R
  CTATGAACCT CTGTAGCTCC AATATGATCT GTGGGCTCAC GTGCCAGTTA GCTTGACCAG
  AAGGCCAGTG AACACCAGTA AAAGACCCTG TCTCAAAGGA ATAAAGTAGG GAGCAAGACA
  ACTGACATCC TCCACAGGCC TTGACACACA CACACACACA CACACACACA CACACACACA
  CACACCTACA CACGTGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8605254	WI_WGS_6_32637661	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199619					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32458295 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628114	regulatory region 628114	1310 bp distal
Rr628115	regulatory region 628115	1843 bp distal
Rr628116	regulatory region 628116	249 bp distal