rs6199458 SNP Detail

Summary

• ID
  rs6199458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111725994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTTCACTtcc
  cgatagcctt tcttttcact gcctctggtg aatggtgagc taaaaaggag cttaaagcat
  ttaagaactg tcattaaaag tagagttgtg aaaaaATGAC GTTATAAGCT TGTCTCAATT
  TGGTTCTTTC ATCTTTTTTT CCCGGTGTTT TGGTGTTTGT CTTTCCTTTT CAGAACTTGA
  CTTTGCTCTC CAGATTGTCT AGGTATGTTA TAGAGGATCC TCAGAGTCGG GCTATTATTC
  Y
  AATCCTGTCT ATCTGGCCAA TGATTCTTGA ATTCTTTTTT CTTACAGCTA TGTGGGAGGA
  GTAGAGATGG ACTTCATCAG AACCTTCAAG TTTCTACAGA CAGTATATTA TTGGCTGACT
  GGTCTCTTCC TCCCTTCCCT GGTCTGAAAA AGAGGAGATA ATGTTTAACT TTAGGGCTAC
  TATAGTCACC ACTGTGAGAG CCCCATTCTT ACTGTGCACC AAGGGCTTCA TACCATGGAA
  AGGATAAAAC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8605093	WI_WGS_4_109612573	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199458					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111725994 () rs orientation: forward

Symbol	Name	Function Class
Rr597504	regulatory region 597504	1731 bp distal
Rr597505	regulatory region 597505	658 bp distal