rs6199335 SNP Detail

Summary

• ID
  rs6199335
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:85110888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAAAAA CGTTTCTCTT
  CTGTATCATT ACTTATTGCT GTTATCTGTA TGATCAATAC CTATTGAGAA TAGATAATGT
  GTCAGGATTT ACTGCATGTC TAAGAAATAC AGAACAAAGT CAAGACTGCT GGAGTAGAAG
  CTCTGAACCC AGCGCCTGAC TCTCAGTTTA TTTGATTTCC ACAGAAGGTA GAAAACATTT
  S
  AGTTTTAACT CCGACAATTG TGAAGTTAGC ATACAACGTT TAATGCAAGC TGAGACTAAA
  GTGGGAGTGG TTTGGAATAC CATTCTGATG AGCTCAGTTG TATTTAAAGT GTTCAGACTT
  AATGTTTAAT TAGGAAGAAA AGAAAAAAAA AGTAAGGATT ATATGACTGA ATAGAAGTAG
  ACAGGAAAGG AGTCCCTTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8604970	WI_WGS_2_86186725	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199335					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:85110888 () rs orientation: forward

Symbol	Name	Function Class
Rr560461	regulatory region 560461	74 bp proximal