rs6199121 SNP Detail

Summary

• ID
  rs6199121
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59781994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGGGAA CGGTAGAGAA
  AGCTGGCTAG CGAGAGTAGC CAATGGGCAA GCCCTGGATT TGACTGAGAG ACCCTGCCTC
  AATGAATTAG GTGCAAAGTG CTGGAAGATG ATCCTCGATG TTAACCTCTA GTCTCCACAT
  GCACGCCCAC CCCTACACAC ACATGCACCC ATACACATGC AAACATGCAG ATACACAGAT
  K
  CACGCTATAC AAAAGTAAAT AGAAGGAAAA AAGTTTACGA TGTGAATCAC TAATCTTGAC
  AGGTTAAAGT AAAGAATTAG TAATGTTAAA AAATATGTTG CTAATACAGT GCTAAACTGA
  TTTTAAATTG GGAGATTCCA CTTTGCTATT CATAATTCTG GATGCAGTAA CTGCTCTATA
  CTAAATTTTC TCTACCTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8604756	WI_WGS_4_58702089	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199121					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59781994 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14350	CpG island 14350			1287 bp proximal
Gm68085	predicted gene, 68085			1888 bp downstream
Inip	INTS3 and NABP interacting protein			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr376571	regulatory region 376571			970 bp downstream
Rr398295	regulatory region 398295			1788 bp upstream
Rr593133	regulatory region 593133			1120 bp distal
Rr593134	regulatory region 593134			1224 bp distal
Rr593135	regulatory region 593135			821 bp proximal
Rr593136	regulatory region 593136			1804 bp proximal
Tssr41949	transcription start site region 41949			619 bp upstream
Tssr41950	transcription start site region 41950			1806 bp downstream