rs6199086 SNP Detail

Summary

• ID
  rs6199086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59781965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGCATA ATTTCAGCCT
  TGGAAGGCAG AGAGGGGAAC GGTAGAGAAA GCTGGCTAGC GAGAGTAGCC AATGGGCAAG
  CCCTGGATTT GACTGAGAGA CCCTGCCTCA ATGAATTAGG TGCAAAGTGC TGGAAGATGA
  TCCTCGATGT TAACCTCTAG TCTCCACATG CACGCCCACC CCTACACACA CATGCACCCA
  Y
  ACACATGCAA ACATGCAGAT ACACAGATGC ACGCTATACA AAAGTAAATA GAAGGAAAAA
  AGTTTACGAT GTGAATCACT AATCTTGACA GGTTAAAGTA AAGAATTAGT AATGTTAAAA
  AATATGTTGC TAATACAGTG CTAAACTGAT TTTAAATTGG GAGATTCCAC TTTGCTATTC
  ATAATTCTGG ATGCAGTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8604721	WI_WGS_4_58702060	WI	MOUSE	f	SNP							T	C
ss38009630	NES09389775	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T			T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6199086					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38009630	NES09389775	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59781965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14350	CpG island 14350			1316 bp proximal
Gm68085	predicted gene, 68085			1859 bp downstream
Inip	INTS3 and NABP interacting protein			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr376571	regulatory region 376571			941 bp downstream
Rr398295	regulatory region 398295			1817 bp upstream
Rr593133	regulatory region 593133			1091 bp distal
Rr593134	regulatory region 593134			1195 bp distal
Rr593135	regulatory region 593135			850 bp proximal
Rr593136	regulatory region 593136			1833 bp proximal
Tssr41949	transcription start site region 41949			590 bp upstream
Tssr41950	transcription start site region 41950			1835 bp downstream