rs6199042 SNP Detail

Summary

• ID
  rs6199042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51114113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GCAGGTGGCA
  TCCACCTGTG AGCACTGAGC ATGGTGGCAG GTGGCATCTG CTAAATGCAA CTGGATGAGN
  GGGCACAAGG CTCTNCTGAA CAAAATCTCA ACTGCCCATT CAGTGGTCTT CTTCTTCTAC
  CCAAGTGGTC TCACTTGCGC ATCAGGCAAT CTCCAGTTTC ATGGGGGAGG TTTGGGCTGT
  GTGTCCTAGC AACTCAGGCA GCCAACAGGA ATGCTTCCTG TGCAAAAAAG GTCATAGCCC
  R
  GAGCTCTGGT TAGAGCCGNG CAGGATCTTA TTGCTGTTCT CAGTTATTTC CCCNTAATCT
  CTCCCTAGCG GTCCGGCTGA CGATAGCCTA GAATATTTGA GCACAGTAAT TTGCGAGATT
  TATGGAAAAC AATTTCTCAG GAATGTGCTC TCAATTTTCA CTGGGCAAAT CCCTCTTTCC
  CCTGTAAGTG CTGGGGCATA TGGGACAGGT AAATGTCTTA ATGGGTAGCA TAAAAGTAAC
  ATTTTTTTCT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8604677	WI_WGS_3_51640658	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6199042					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51114113 () rs orientation: forward

Symbol	Name	Function Class
Rr576240	regulatory region 576240	within coordinates