rs6198832 SNP Detail

Summary

• ID
  rs6198832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130806780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCTGTT CTAAGGTGCA
  GGCACACATG GTGCACATAC ACACATGGAG ACAACTCATA GACTTGAAAA TTTAAATAAA
  TCAATCTTTT TAAATTGACC CAACTGTTCC TGGGTGATTG GTATTGTAAT TTATAATATA
  GGAAAATGTG AGCTACCTGG CCAAGTCGAT GGATTGCAAA TCAACTTAGG AGAATATTTA
  Y
  GGGCAGAGCT AATGGAAATG AAATTCTGAG TTTGGTTTGA TCTGTGAGTT GCTTAAATTG
  GTTCTGCCTT TTCCCTCCGC CAGCCTCACG GCCCTGGGGA AAACCAAGGC TACTCAACTC
  CAACACGGAA CAGCTCACCT CAGTGCCACT TCAGGGACCA AGGAGGAGAG AGGGAGGCAG
  GGGGTGTGAT GTGATTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8604466	WI_WGS_3_131569164	WI	MOUSE	f	SNP							C		T
ss51635756	NES14653347	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6198832					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635756	NES14653347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130806780 () rs orientation: forward

Symbol	Name	Function Class
Rr585250	regulatory region 585250	849 bp proximal