rs6198785 SNP Detail

Summary

• ID
  rs6198785
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81822049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATATCT GAGAGTTTTG
  CTTTGCATGC TTCAAAACTG TTGTGTTCTG TCATTTTTTG ATTGTCATGT CATCAGTGTT
  TACCCCTTTT ATCTAAATAA AAGAACTATT TCATCCTATT AGCAGTTCTT TTGATTTTCA
  ATATTTATAT CCCAACTTTT TATATATGCT CCATATATCT TAATTGATGC ATTATTTTTG
  K
  TAGTGGCTAT TAATTTTATG AAATAATAGG TTTCATTGTA ATATTTCATA CATGTGTAAA
  ATGTACTTTC ATCATATTTA GTCCCCATTA CCCTGTTCAA TAGTCAAGAG CATTTGAATA
  TGGCCTCTAA ACAGAAGCTC TACAACCTTG GGTAGCTGAG GGGTAATGAT GCTGTGAAGA
  GCAAGCCTTG AGATGGCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8604419	WI_WGS_7_71683840	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6198785					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81822049 () rs orientation: forward

Symbol	Name	Function Class
Gm45089	predicted gene 45089	364 bp downstream
Gm73333	predicted gene, 73333	within coordinates
Tssr67529	transcription start site region 67529	1497 bp upstream