rs6197974 SNP Detail

Summary

• ID
  rs6197974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106078284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGTGCC AACAAGAACA
  TTCCCCAGGG ACTGCCTGGC AGGAACTGCT GGCCAATCAA CTGCGCCAAA GCCTGCCCCC
  TGGGCATCTT CATAGGCCCC CTCGACAATC TCTAGGCAAG AGGGACTCTG GAATTTACAA
  GGCCAAAAAG AGGCTCTTAA ATAACTTTTA ATTTATTTTC AAAAGAAAAT GGAAGGGCGG
  R
  GGCTGTAACA CACACCCTCC AAAGAGGGTG AGGCAGTGGA AGAGCTATGC CAGCCACACG
  GCAATGGCCA CGCAGGCATC CACTGTAAGT GATTCATTCT GAGAGAGAAG GCCCACAGGA
  CCAGGACCAG AACTCCTTAA TCTGCCACTT GAGAGCTTCT CTGAGTGGCA CCAATCAACC
  TTCATACACT CACTTCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8603607	WI_WGS_4_103935910	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6197974					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106078284 () rs orientation: forward

Symbol	Name	Function Class
Gm12729	predicted gene 12729	within coordinates
Rr596704	regulatory region 596704	104 bp distal