rs6195988 SNP Detail

Summary

• ID
  rs6195988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154262394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAATGTCTCT
  GACAAGGAAG CAGTGTGCTC AGCAGGAATT CTCAGTGCTC TTGTTGGGNC TGGGGTTCAT
  AGGGTGCCTG GGCCTGCTCT NCCTGACCAA GGAGCTCCAG GGGCCGCTCG AGCGTTAGTG
  TGTATTTGCT GTCCATTAGG GCTCGTGGAG GATAGCAATG GAAAAAGTCC TTGCCCAGGA
  TAGCCTAGGA CGCCTGTGGT AATGTCTGGA NGTGGGAAGT GATGAGGGAT GGGGGGNGGG
  R
  GGGCTGTANC AGCTGACCTG GGTGGGCCAT GCTNCTCAGG CCTGCAGAGC ACAGCCAGCT
  CCTGCCCCCA TGGCGTGACA GGCTGCAGGC CCAGAGACCG AGGGTCAAGA GGAGCCTCCC
  ATTCTCAGAG GTCAACATTT TGTACCTCTC CTTCCACCCT TCATATGGTC CTGCGTGCAC
  ATGTGGGTGA AGCAGGGGTT GATCCTCCAT GCTATGTCTC CCTGCTCATA GCTTGTGAAA
  GACATGGTGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8601615	WI_WGS_4_149613692	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6195988					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154262394 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr606099	regulatory region 606099	98 bp distal