rs6195291 SNP Detail

Summary

• ID
  rs6195291
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48632331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTAAGAA CCTTGATAGG
  GGCCAAAGTT AAATGTAATT ATAAGGAACA TTCTTAGAAT CTTTCCCATG TCATCTACAG
  CATCTAGAAT AACTAATGTA ATCATTTCTA TACTGTACAC ATGCTTTTCT TGTGGCCTCA
  TGTAAGATAT GTAAGCTGGA TGGGAGCATG AGATGATGAA TACTACAGTA AAGAGTAATC
  S
  CTGAATAATC TTTAACAATT TAAACTTTGT TATGAAAATT TTGCAAATTA AAAGCATAAT
  CTTGAGATCC AGTTTACAGA AATGAGAACA TACATGTAAT AAAATTATTG TTTCTGAATA
  TTTAGGAGGA GTTCTTGGAA GATATTTTTG CAATCATGTG TAGACTCAGA TCTTATCCAT
  TGTTTTTGTG TAGCTGTGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss8600916	WI_WGS_4_47493184	WI	MOUSE	f	SNP					C	G
ss37985167	NES09440171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C			C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs6195291					SNP	C	C	C	C	C	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985167	NES09440171	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48632331 () rs orientation: forward

Symbol	Name	Function Class
Rr592000	regulatory region 592000	1236 bp proximal
Rr592001	regulatory region 592001	1506 bp proximal
Rr592002	regulatory region 592002	1825 bp proximal
Rr592003	regulatory region 592003	1906 bp proximal
Tmeff1	transmembrane protein with EGF-like and two follistatin-like domains 1	Intron