rs6193806 SNP Detail

Summary

• ID
  rs6193806
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:105629557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCGTTT TTTGAGGTAG
  AATACAGTCC ATACTTCTTA TATGCTAATT CTATTAAAGT GAAGATTATA AAACAATGAT
  TGTGATGATT TTGTTCATTA TTTTTGAGCA GTTTTATCTA ACAAAATTAT ACCAACTGAC
  TTACAATGTC TATTAAATTA ATTGTTGCAG ATTTAATGTG TTGTTGAAGC TCACAGTTTA
  K
  TTTAGAATAT AAAGACAACT TTTTGAAATT TAAATGGAAC CTACCTCTTA GTATTATCAC
  AGAATAACAT TCATACAAGG AAGTAATAAG ACAAATATCA CCCCCCCCCC AAAAAAAGCT
  TAAAACATTT CACAGAGTAC CTTAAGGACA AATCTATTTT AACTTAAAAG AGAAAGAAAT
  TGTTGATTTT TTACACATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8599426	WI_WGS_2_106717896	WI	MOUSE	f	SNP						T		G
ss37615746	NES09064112	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G		T		T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6193806					SNP	T	T	T	T	G	T	T	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615746	NES09064112	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105629557 () rs orientation: forward

Symbol	Name	Function Class
Elp4	elongator acetyltransferase complex subunit 4	Intron
Rr366618	regulatory region 366618	within coordinates
Rr562288	regulatory region 562288	1049 bp distal
Rr562289	regulatory region 562289	692 bp proximal
Rr562290	regulatory region 562290	845 bp proximal
Rr562291	regulatory region 562291	1537 bp proximal