rs6192510 SNP Detail

Summary

• ID
  rs6192510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150649251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATAACAT CAATGTTGAG
  ATCACAGCTT CACATAATAT GTAGTTATGT TATGTACAAA ATGGCTGGAG TATGATTAGG
  GCCTTTTCGG AAATGGCTGA AATTCTGTTC TAATCCCAAG CCAGAATTTG ACAATTCTTT
  TTATGAAACT CAAACATCTG TCTTTATTAA AATTTTTTTT CTTAAATATT GTTTATTTCT
  R
  TGTGTCACAA TGTTTGTGTT GGGACTTTGC ATGCCATAAG TCTCATTTAG AGGTCCGAGG
  ACAATTTGCA GGTCCTAGGG ATGGAAGTCC GGTTGTCAGG TTTAGATGCA AGCCCCTTTC
  CATGCTAAGC CACATTGCCA GTCCTCAAAA ATGCCCTTTT ATGTTATTGG GTTTTTGTTT
  GTTTTGTTTT TCAAGACAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8598122	WI_WGS_4_145961541	WI	MOUSE	f	SNP							G	A
ss46716386	NES11011731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G			G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6192510					SNP	G	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716386	NES11011731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150649251 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1387 bp upstream
Rr605335	regulatory region 605335	983 bp proximal
Tssr40414	transcription start site region 40414	1284 bp downstream
Tssr40415	transcription start site region 40415	1661 bp upstream
Tssr40416	transcription start site region 40416	1764 bp upstream