rs6192453 SNP Detail

Summary

• ID
  rs6192453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145398144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CAAACAATAT
  ACTAAGTCAT TTATCCCTTA AGGAATGTGT TTATTCAGGA ACAGCTGGCC ACAAGTGAAT
  GCAAGTGTGT GACTTCCCAA AATACACATC TTCTCTATGC ACTCCCAATT TGCCACCACA
  TCTGACCAAG ACTTTCAATG TGCCATACTC TCTTACCACA TTTGAAATAT GTTCTAAATT
  TCATTTTCTT TCTATTCATC TGTAagagag agagagagag agagagagag agagagagTG
  R
  AATTACTCTG GNGGTCTTAC TGCACCTCCT GAGGATTTTG TCCACCAAAT GCCAGGATAA
  AATATAAATA ATATAGGCAG AAAATTAGTT TTCATAGTCT AGGTCCCCTA GTCCTGCTGA
  GAAAGCACTG AGTACTACAG ATACTGTCAA TATGCCCATT TGATCAGCCA TCCCCTTTGC
  AGTATAAATG TGTNCCATTA TATAGAGCCA GTTAAATACT TCCAAAAATC CCATAGACAG
  TCATGGAGGA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss8598065	WI_WGS_2_146613776	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs6192453					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145398144 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm14092	predicted gene 14092			1242 bp upstream
Rr566543	regulatory region 566543			124 bp distal
Rr566544	regulatory region 566544			1399 bp proximal
Rr566545	regulatory region 566545			1502 bp proximal
Slc24a3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3			Intron
				Noncoding-Transcript-Variant