rs6189860 SNP Detail

Summary

• ID
  rs6189860
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150648781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTCTCA GGGTGGACAG
  GAGCGCACAC AGTGGGCATG GAGCCCGTTG TGCACTGAGA GCTCAGGCAG GTGTTCCCAG
  CAACAGCACA GGAACCTCAG AACACATTAA CCTGGAGAGG GAGATTAATG TTACTGCATT
  TATTTCTGTA AGCATCTTCC CATTTCGGGA ATGGCTGTGA CTAAACAGCC ATGTGGGATT
  Y
  TCTGTGAGAC AGAAGAGTAG ACTGCACACA GACCTCTCTC TCGGCCCCTC CCACCTGGAT
  GGTCGGAAGC CCTGGGTAGA CGGATACGTG CAGTAGATGA ACACATCAAA CATATCCTGA
  TAACAAATCA ACAAGAGCAT ATTTGCAAAC TAGTAATGTG GGCGTGCTTG TTGACATAAA
  AGGAGTCCAG GGTGAGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8595458	WI_WGS_4_145961071	WI	MOUSE	f	SNP							C	T
ss46716383	NES11011751	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6189860					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716383	NES11011751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150648781 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1857 bp upstream
Rr605335	regulatory region 605335	1453 bp proximal
Tssr40414	transcription start site region 40414	814 bp downstream