rs6189849 SNP Detail

Summary

• ID
  rs6189849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150648777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCGTCT CTCAGGGTGG
  ACAGGAGCGC ACACAGTGGG CATGGAGCCC GTTGTGCACT GAGAGCTCAG GCAGGTGTTC
  CCAGCAACAG CACAGGAACC TCAGAACACA TTAACCTGGA GAGGGAGATT AATGTTACTG
  CATTTATTTC TGTAAGCATC TTCCCATTTC GGGAATGGCT GTGACTAAAC AGCCATGTGG
  R
  ATTCTCTGTG AGACAGAAGA GTAGACTGCA CACAGACCTC TCTCTCGGCC CCTCCCACCT
  GGATGGTCGG AAGCCCTGGG TAGACGGATA CGTGCAGTAG ATGAACACAT CAAACATATC
  CTGATAACAA ATCAACAAGA GCATATTTGC AAACTAGTAA TGTGGGCGTG CTTGTTGACA
  TAAAAGGAGT CCAGGGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8595447	WI_WGS_4_145961067	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189849					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150648777 () rs orientation: forward

Symbol	Name	Function Class
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1861 bp upstream
Rr605335	regulatory region 605335	1457 bp proximal
Tssr40414	transcription start site region 40414	810 bp downstream