rs6189055 SNP Detail

Summary

• ID
  rs6189055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96688734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAAATGAA ATAAGCCTGA
  CACAGACAGG CAGGCATCAT ATTTTCTTTC ATATGCAGAA TCTAAATTAA AAAAAAAAAA
  AGGAGGGCCG GGCTTGGTGG CCACGCCTTT AATCCCAGCA CTCGGGAGGC AGAGGCAGGT
  GGATTTCTGA GTTCGAGGCC AGCCTGGTCT ACAAAGTGAG TTCCAGGACA GTCAGGGCTA
  Y
  ACAGAGAAAC CCTGTCTCAA AAACAAAACA AAACAAAACA AAACAAAACA AAACAAAACA
  AAACAAAACA AACAAGAAAA CTGACATGAA AGAAGAAAAG AGACCACATG GGAAATGGAA
  GGATACCGGT GGAAGGGAAG AGGTAATGAG AAGGGTATGA ACAAAGGATA TAATGTCCAT
  CTATGAAAGT AGCATGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594650	WI_WGS_4_94554386	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189055					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96688734 () rs orientation: forward

Symbol	Name	Function Class
Rr376882	regulatory region 376882	within coordinates
Rr595533	regulatory region 595533	327 bp distal
Rr595534	regulatory region 595534	909 bp distal