rs6189052 SNP Detail

Summary

• ID
  rs6189052
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96688730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTTAAA TGAAATAAGC
  CTGACACAGA CAGGCAGGCA TCATATTTTC TTTCATATGC AGAATCTAAA TTAAAAAAAA
  AAAAAGGAGG GCCGGGCTTG GTGGCCACGC CTTTAATCCC AGCACTCGGG AGGCAGAGGC
  AGGTGGATTT CTGAGTTCGA GGCCAGCCTG GTCTACAAAG TGAGTTCCAG GACAGTCAGG
  S
  CTACACAGAG AAACCCTGTC TCAAAAACAA AACAAAACAA AACAAAACAA AACAAAACAA
  AACAAAACAA AACAAACAAG AAAACTGACA TGAAAGAAGA AAAGAGACCA CATGGGAAAT
  GGAAGGATAC CGGTGGAAGG GAAGAGGTAA TGAGAAGGGT ATGAACAAAG GATATAATGT
  CCATCTATGA AAGTAGCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594647	WI_WGS_4_94554382	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6189052					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96688730 () rs orientation: forward

Symbol	Name	Function Class
Rr376882	regulatory region 376882	within coordinates
Rr595533	regulatory region 595533	323 bp distal
Rr595534	regulatory region 595534	905 bp distal