rs6188827 SNP Detail

Summary

• ID
  rs6188827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134880205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC GGCGCGCTAA GCGCGCAGGC
  R
  ACCGCGGGCC CCGGCGGCCG CACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8594421	WI_WGS_4_132733190	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6188827					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134880205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15061	CpG island 15061	1908 bp distal
Cpgi15062	CpG island 15062	1349 bp distal
Cpgi15063	CpG island 15063	within coordinates
Rr601932	regulatory region 601932	1889 bp distal
Rr601934	regulatory region 601934	388 bp distal
Runx3	runt related transcription factor 3	Coding-Synonymous
Tssr1337	transcription start site region 1337	601 bp downstream
Tssr39602	transcription start site region 39602	340 bp downstream
Tssr39603	transcription start site region 39603	146 bp downstream
Tssr39604	transcription start site region 39604	100 bp upstream