rs6186220 SNP Detail

Summary

• ID
  rs6186220
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108177713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATCTGAAA TGCTGCTAAA ACACAAATTT CTTCCCTGCC
  AAGACCCTAG GGCCGGGACT TCTGATTCCA TCCATCTGAA GTGTAAGTTG AGGGCTTGCA
  Y
  TTCTAGCAAT TCCCTGGGTA GCAGGCAGTG CTACTGCCGT TGCTGCTGCT GATCTGAAGG
  GCAGCTCTGT GAGAACCCTG AGTATTCCTC AAAAGTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8591809	WI_WGS_6_109040140	WI	MOUSE	f	SNP		T	C
ss133497271	ENSMUSSNP2226376	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6186220					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108177713 () rs orientation: forward

Symbol	Name	Function Class
Rr636050	regulatory region 636050	1565 bp distal