rs6183883 SNP Detail

Summary

• ID
  rs6183883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101620060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATTACA GTTATAAAAA
  AAAAATCAAT GAAAATGATT TTATGGTTGG GGGTCACTGC AACACGAGCA ACTGTAAGGT
  TGCAGCAGTA GGAAGGTTTA GAGCCCCTGG ACTAGAGCTG AGAGTTCTTC TATCTGAAAG
  AGTAGAGCCA AAGGGTTGTG ATTCCAAGCT GAAGGAGGCA GTTGATGAGG CGTGGCAATC
  R
  TTTTCCTGAG ACAGAAATCT ACATGCTTAC TTCTTCCAAA AGCTAAGATC ATCTTCAACA
  GACAACTATA ACCCAATTCA CAAAGGAAGT GCTTGGAGTC CATCCCTAAG CATCCACATG
  TACATGTGCC TGCGTGCGTG TGTGCGTGCG TGCGTCCGTG CCTGCGTGCG TGGGTGGGCT
  GGGCAGCAGG CAAGGGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8589464	WI_WGS_3_101819356	WI	MOUSE	f	SNP							G		A
ss51582608	NES14672077	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6183883					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582608	NES14672077	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101620060 () rs orientation: forward

Symbol	Name	Function Class
Gm65392	predicted gene, 65392	within coordinates
Rr1547	regulatory region 1547	within coordinates
Rr375471	regulatory region 375471	within coordinates
Rr582112	regulatory region 582112	722 bp distal
Rr582113	regulatory region 582113	267 bp distal
Rr582114	regulatory region 582114	24 bp proximal
Rr582115	regulatory region 582115	1754 bp proximal