rs6180217 SNP Detail

Summary

• ID
  rs6180217
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:144218880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGATGGA AACTGGCAAC
  CTTTATTTGG GGCAGTATGG GAAGTGGCTC TCTTCCTGGC AATCTGGATA ATTAAAAAGG
  ACTCAGTGGT CTCAGAATCA AAAGGGTGCA TGGAAGTGGC AAAAGTGGCA AGGCTAGGAA
  GGGACTGGTT GTGTGCACTC ATCTGAGTGA CCACACACTC AGAAGCTGAG CCAATGAGTT
  M
  CCTGTTGCAA CAGCTGCAAG GATGGATCCC CAGGAATAAT CTTTTAGGTC TCAGCAGAGA
  AGCGGCAGGG GTAGCATTGA TATATCCCAG GGAAAAGGAC GAGCAAGGTT CTCCATAGGG
  AAGAGACCAA CACTCACAGG CACACCAGCG CTGAGCCTGA GCAACGCCTG CTCTGTGCAA
  AGGAGCAAAG CTCTGCTTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8585784	WI_WGS_3_145033271	WI	MOUSE	f	SNP							C		A
ss47020066	NES10845944	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		A		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6180217					SNP	C	C	C	C	C	C	C	A	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47020066	NES10845944	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:144218880 () rs orientation: forward

Symbol	Name	Function Class
Hs2st1	heparan sulfate 2-O-sulfotransferase 1	Intron
Rr586664	regulatory region 586664	124 bp proximal