rs6180179 SNP Detail

Summary

• ID
  rs6180179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58491186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATAAAA AGCTGGGGCG
  ACCATAAAAT TCATAAGACA TGATTGTTTT CCCATGGTCA AAACTTAAAT ATAAAAATTA
  CAGTTAGTAC AATTTAATAA TACCAGCATA AATCTATCAT TGTATCAGAA AGAGCTCGGG
  ACTGGGGAGT GGAATGTAAA CAAATGTCTG TTCCTTTTCT CTATTCTTCA GATAAGAACC
  S
  TGAAAGGCAG AGAAGAGGAG GAGGAAGAGG AAGAAATCAA AACATATTAA GCCTACTGTT
  TAAACTGTGA CAACTTGCAA AAATTATTCA AATGCGCTGA GGCATACACA ATCTATCTGA
  AAAATCCGAA GCTCACTTTC CACACTGCTG AGGAAGACAT GAGCGCTTGG TCTCCTGCTG
  GTCGTGTTGG AGAAAAGAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8585746	WI_WGS_4_57404281	WI	MOUSE	f	SNP							C		G
ss38013857	NES09401637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6180179					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013857	NES09401637	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58491186 () rs orientation: forward

Symbol	Name	Function Class
Lpar1	lysophosphatidic acid receptor 1	Intron
Rr592898	regulatory region 592898	487 bp distal