rs6179612 SNP Detail

Summary

• ID
  rs6179612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150304771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT TGCCCCACCT GAATTTAGTA
  R
  CCACAGAGTC CAGAAGAGGG TGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8585178	WI_WGS_4_145614021	WI	MOUSE	f	SNP		G	A
ss148050398	ENSMUSSNP1327583	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321428672	CHEV_4_149594423	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6179612					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150304771 () rs orientation: forward

Symbol	Name	Function Class
Rr605229	regulatory region 605229	510 bp distal
Rr605230	regulatory region 605230	589 bp distal
Rr605231	regulatory region 605231	218 bp distal
Rr605232	regulatory region 605232	6 bp proximal
Rr605233	regulatory region 605233	21 bp proximal
Tssr44739	transcription start site region 44739	387 bp downstream