rs6179581 SNP Detail

Summary

• ID
  rs6179581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:54945240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCCACTAAC
  CAAACAACAG CTCAAAGCAG CTTGTACTTG ACCAGTTCCT ACTTAATCAA CAGACTCCCG
  GGCAGCCTAA CAGCAAGTGA CTGCAGCAAT GAGCCCGGGA CTGGTGGGAA GGGGGCCGGG
  CAGAGCCGGG CAGAAACAAG GCTGGAAGCA AAGCAGCGGC TGGTGCTAAG GGGCTAGGTG
  CACTAAGGTG TAAAGCACTA AGACTCCGAG AGCCAGTANA GAAATACAAA AATAATCAGT
  R
  GTGAGTGGCA ATGATGATNA AACACACCAA TTCTGCACCA TGNTCTGTCT GCATTCAGAA
  TGGGCACCCA GATAGATCCG AACTTATTTC CTATCTCTAT AAAGGGAAGA GGGGCTCTCC
  TCACACTCAG GCCACAGCCA TGGTCTCAGT TTTAATTGCC CTGAGGACCC CTCTACCCAT
  CTTCTCTTCC CTGAGCGGAT ATGTAGGTCA CCAACCAGCA AGTGGATCAA ATCTCCTAGG
  TAGAGACCTT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8585147	WI_WGS_1_55457480	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6179581					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:54945240 () rs orientation: forward

Symbol	Name	Function Class
Ankrd44	ankyrin repeat domain 44	Intron
Rr1418	regulatory region 1418	within coordinates
Rr411098	regulatory region 411098	123 bp distal
Rr411099	regulatory region 411099	142 bp proximal
Tssr11696	transcription start site region 11696	1083 bp downstream