rs6178117 SNP Detail

Summary

• ID
  rs6178117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:143109473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC TAGAAATTGA ACTCAAGTCT
  K
  CAAGAGCAAC TAATGCTCTA GTGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss8583680	WI_WGS_4_141158740	WI	MOUSE	f	SNP	G	T
ss321404611	CHEV_4_142972806	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs6178117					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143109473 () rs orientation: forward

Symbol	Name	Function Class
Rr604202	regulatory region 604202	1804 bp distal
Rr604203	regulatory region 604203	1560 bp proximal
Rr604204	regulatory region 604204	1790 bp proximal