rs6176189 SNP Detail

Summary

• ID
  rs6176189
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130589488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC AGCAAATCGT GGATCCTTAC
  M
  CTAAAACTGC TTTGTAGGTC TGAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss8581748	WI_WGS_3_131351738	WI	MOUSE	f	SNP	C			A
ss135899910	ENSMUSSNP1065356	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		C
ss320966638	CHEV_3_130498757	CHEVERUD	SCREENING_POP	f	SNP						A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs6176189					SNP	C	C	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130589488 () rs orientation: forward

Symbol	Name	Function Class
Gm36443	predicted gene, 36443	within coordinates
Rr585209	regulatory region 585209	1816 bp distal
Rr585210	regulatory region 585210	1489 bp distal
Rr585211	regulatory region 585211	674 bp proximal