rs6175664 SNP Detail

Summary

• ID
  rs6175664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104626000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGCCC TGTGTCCTAA
  CAGTGCCACC CCCTATGAGC CAAGCATTCA AGCACATGAG TCTATGAGGC CATACCTAAT
  CAAACCACCA CATCTTCTCT TCATCTTAGA AACTCATTTG GAAAACAAAA ATCCATTTTC
  CTAGCTTTCT CTTGTCTAGA CCCAGAAGCC AGAAGCTTAT CAGTGTTAAT GAAGCCAGGA
  Y
  CTAATTATTG AGCATACTCA TGTTAAAAAG GGCCTTTCAA ATCATGCAGA GAGCTAACAC
  ACTCAGAATA AAAAGGAAAG GAAAGCTGTT ATCTTGAAAT GCCTGGGCTC CTACCTGGGC
  TGAACCTTTG AAGCCCTTAT GGGTAATTAG GTGTCTTCCA GCACTGTACA GTCTCAACCC
  TGCATGGGGA AGATGTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8581219	WI_WGS_3_104827585	WI	MOUSE	f	SNP							C		T
ss46832548	NES10722016	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6175664					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832548	NES10722016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104626000 () rs orientation: forward

Symbol	Name	Function Class
Gm64989	predicted gene, 64989	1806 bp downstream
Rr582589	regulatory region 582589	1526 bp proximal