rs6175509 SNP Detail

Summary

• ID
  rs6175509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149652887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TTCTTAGGAT CCAGCGCACC
  R
  GGCACACATG TGGTGCACGT ATCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8581064	WI_WGS_4_144958383	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6175509					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149652887 () rs orientation: forward

Symbol	Name	Function Class
Ctnnbip1	catenin beta interacting protein 1	1993 bp downstream
Gm13066	predicted gene 13066	640 bp upstream
Gm70645	predicted gene, 70645	within coordinates
Rr604967	regulatory region 604967	766 bp distal
Rr604968	regulatory region 604968	651 bp distal
Rr604969	regulatory region 604969	236 bp distal
Rr604970	regulatory region 604970	164 bp proximal
Rr604971	regulatory region 604971	1064 bp proximal