rs6175152 SNP Detail

Summary

• ID
  rs6175152
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10505406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACCGCCC CCGGAGGCCC
  ACACTGGGAT TGCTGGTCCC TGTCTCTGCA GTGGCCCGAA CAAATCTAAT TTTATCACAG
  GGAATCGACA GTTTTTTTTC CACAGGCTTT ATTACTAGGG AGTTTCTGAG AAATGGGGCT
  ACAATATCTA GTTTGCCAAG TAGATGAAGA GAAGACTTCA ATTCCCAGAA GGCACTTTGG
  S
  TAGCATAAGT TCGGGCTAGA GCTTTGCATC ATGGGACTTG TAGTTATCAC TGGTTGGGGG
  GGGAGGTCTA GAAGGTTAGT CATTTTCCAT AATTAGCATT TCTTTGATGG ATTGACAACT
  GATTTGAAGA GTAGGCAGAT AGAACACTAT TTTATTGTGT ATTTGTCCCT GTAATTTAGG
  ACTATGGTAA AGATTCCTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8580706	WI_WGS_3_10485714	WI	MOUSE	f	SNP	C	G
ss320653590	CHEV_3_10440346	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6175152					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10505406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12984	CpG island 12984	111 bp distal
Rr573640	regulatory region 573640	270 bp distal
Rr573641	regulatory region 573641	620 bp distal
Rr573642	regulatory region 573642	within coordinates
Snx16	sorting nexin 16	244 bp upstream
Tssr32622	transcription start site region 32622	369 bp upstream
Tssr32623	transcription start site region 32623	340 bp upstream
Tssr32624	transcription start site region 32624	324 bp upstream
Tssr32625	transcription start site region 32625	219 bp upstream