rs6173442 SNP Detail

Summary

• ID
  rs6173442
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76475768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCACTATT TCCACTAAGT
  CCTTTAAGAT CCACTCCCAA ATTCTCTACT CCTTTAACTT CATTTCTTTA TTATTCAATA
  GCTCACTGAT CCCAGTTTGT GTTGTCCCTA TAATTAAGGA TATGGGGCCA TCCATTGAGT
  ATGGTTGACC TACCAGGGGC CACATCTGTA AAGAGCACTG ACTTTACCTC TCTCAGAAGC
  W
  ATCAGCTGTT AATATGGCCT CAGTTAGTGG CTATGATCAT GAACCCCTTC CATCCCCATG
  CTAAAATGCT GTCTGTTTTA ATCTTTGTAA GTCTGGTGCA GGAGTTGCTG TGAGTGCATG
  AGTGCTGAGG TTTGATCATA TCAAGAACAC TGTTTTTCTC TGGTCTTGTA AGACCCCTGG
  CTCTTAAAAT CTTTCTTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8578987	WI_WGS_3_77239142	WI	MOUSE	f	SNP			A	T
ss45453277	mCV24588149	ABI	CRAMUS_MOUSE	f	SNP	T	T	A		A
ss135341143	ENSMUSSNP5738849	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6173442					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76475768 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	919 bp distal