rs6173005 SNP Detail

Summary

• ID
  rs6173005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65947895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACCAA GCAGGGAGCA
  TGCAGGAACT GGATCTAGAT CCCCTATACA TTTGTAGCAA ATGTGCAGCT TGGTCTTCAT
  GTAGGTCCTC TAACAAGTGG AAGCGGGGCT GTCTTGGTTT CTGATCCTTG ACATTGGATC
  CCCTTCCCTC TACCTGGGCT GCCTGGTTCA GCCTCTGTGG GAGAGGATGT GCCTGTCTTG
  Y
  TGGGACTAGA TGCCCCAGGA TAGAGTGGTA CCCAAAGGGG CTCCTCTTCT CTGAGAAGGG
  GAGGGGGATA TGGAGGAGGG ACTTGTAAGG GTGGGACTGG GAAGAGAGGA GGGAGGGGGC
  TGTGATTGGG ATGTAAAGTG AATACAAAAA ATATCTGCAA TGGGTTCTTG GCTCCACCTT
  GTGCTCATTT CTCAGTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8578550	WI_WGS_3_66572398	WI	MOUSE	f	SNP							C		T
ss51539429	NES14688493	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6173005					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539429	NES14688493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65947895 () rs orientation: forward

Symbol	Name	Function Class
Rr375126	regulatory region 375126	1804 bp upstream
Rr577786	regulatory region 577786	336 bp proximal