rs6172950 SNP Detail

Summary

• ID
  rs6172950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76475720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTTAGAGAGA
  TATCAAATAT TTTAGGAGAA TAAAGGGTTA TTAAATATAA TATTGTATTA ACTACATGTG
  AATTGCatat attttgatca tgtatatctc tcactatttc cactaagtcc tttaagatcc
  actcccaaat tctctactcc tttaacttca tttctttatt attcaatagc tcactgatcc
  cagtttgtgt tgtccntata attaaggata tggggccatc cattgagtat ggttgaccta
  Y
  caggggccac atctgtaaag agcactgact ttacctctct cagaagcnat cagctgttaa
  tatggcctca gttagtggct atgatcatga accccttcca tccccatgct aaaatgctgt
  ctgttttaat ctttgtaagt ctggtgcagg agttgctgtg agtgcatgag tgctgaggtt
  tgatcatatc aagaacactg tttttctctg gtcttgtaag acccctggct cttaaaatct
  ttctTTGACT                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8578495	WI_WGS_3_77239094	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6172950					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76475720 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	871 bp distal