rs6172842 SNP Detail

Summary

• ID
  rs6172842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:76475675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGTAATATT
  TGGCAAGAAT AATATCTATG CTTCTTGGTC AAATTGTTAG AGAGATATCA AATATTTTAG
  GAGAATAAAG GGTTATTAAA TATAATATTG TATTAACTAC ATGTGAATTG Catatatttt
  gatcatgtat atctctcact atttccacta agtcctttaa gatccactcc caaattctct
  actcctttaa cttcatttct ttattattca atagctcact gatcccagtt tgtgttgtcc
  Y
  tataattaag gatatggggc catccattga gtatggttga cctancaggg gccacatctg
  taaagagcac tgactttacc tctctcagaa gcnatcagct gttaatatgg cctcagttag
  tggctatgat catgaacccc ttccatcccc atgctaaaat gctgtctgtt ttaatctttg
  taagtctggt gcaggagttg ctgtgagtgc atgagtgctg aggtttgatc atatcaagaa
  cactgttttt                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8578387	WI_WGS_3_77239049	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6172842					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:76475675 () rs orientation: forward

Symbol	Name	Function Class
Fstl5	follistatin-like 5	Intron
Rr578399	regulatory region 578399	826 bp distal