rs6171134 SNP Detail

Summary

• ID
  rs6171134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65947505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGAGAA GCCCTGGGTC
  AAGGATGTCT GAGAGGAGGC TTTTTCAATC CCTCAAAAAT TATCTGGTTT ACAAGGATAA
  GTTGGAGCCG AGACTAAGGG AACAGCCAAA TAATGATGGC CCCAACTTGA GATCCATTCC
  ATGTGAGAGA GCCAACTCCT GACACTATTA ATGATCCTCT GCTATGCTTG CAGACAGGAA
  Y
  CTAGCACAAC TGTCTCCTGA GAGGCTTCAT CCAGCAGTGG ATGGAGGCAG ATGCAGAGAC
  TCACAGTCAA ACATCAGACG GAGTCTTGTA GAAGAGTGGG GGATAGAATT GAGCAAGTTG
  GAGGGATCAA GGACATTACA AGAAGACCCA CAGATTCAAC TAGCCTGGGA CCATGGGGGC
  TCACCAAGTA GGCCACCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8576678	WI_WGS_3_66572008	WI	MOUSE	f	SNP							C		T
ss51539444	NES14688488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6171134					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539444	NES14688488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65947505 () rs orientation: forward

Symbol	Name	Function Class
Rr577786	regulatory region 577786	726 bp proximal