rs6170727 SNP Detail

Summary

• ID
  rs6170727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130739224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAACAA AAACACAGTG
  TATGCTGTCT AGATCCTTAT AAACATATTT CCTCTTCATG AAGACAACTG TCACACTTCC
  TTCCCTGAAG TGTATGCTGT TAAGCTTATT TACTTCCTGG TACTCAGAAT AGGTTTTTCT
  CCAGCAGTCT GGGAAGGCAG CCGGGTGGGT GGGTGGCTTT GGGGCCCACA CTGGACCAGC
  R
  TCTGAGTCGC AACAAATCCC ATATTGTCCA GACCCTAATG AAATTGCTTC TGGCGTCGCC
  AGGAAAGTGT TTACTCGCCT CTAAATTAAC TCCATTGTCC ATCCGAGAGA AGAAAGTAAG
  TCAGCTATCA AAAGGGAAAA AAACAAAAAA CAGAAAACAA AAAATGAGGC AGGCACGGAG
  TTCTTGCTTA CAGCAGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8576270	WI_WGS_3_131501716	WI	MOUSE	f	SNP							A		G
ss51636347	NES14654931	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6170727					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51636347	NES14654931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130739224 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	334 bp proximal
Gm65596	predicted gene, 65596	176 bp downstream
Rr585243	regulatory region 585243	1987 bp distal
Rr585244	regulatory region 585244	within coordinates
Rr585245	regulatory region 585245	1807 bp proximal
Tssr35670	transcription start site region 35670	1740 bp downstream