rs6170339 SNP Detail

Summary

• ID
  rs6170339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTCAAG AGCTGTGTTG
  GTTTACACAT GGTGTTGGAC TGCAAACTAA GTTTTGTGTC TTGGTCTTAT TTGACTCAGA
  TGAAAAATTA AGTTCTCAAG ATGTCCTGTG TAGTTTAAAT GTAGACAACC ACCACAGAGG
  AGAGGGGGTT GAAGATGACC AGTATCAAGA TCCCAATGTG TGATCAGATA CTTAGAAACA
  Y
  CTGAGGGTGG CTTTGAACTT TCTGTAAAGT ATTGTGATTT GTACATTTTT CTATGTTGTT
  GGGGCCCAAA ATCCCCTGTT ATCTCAGTCT CCATCTTGTC CGTGGGCCAT CATCTATTAA
  CTAACACTCT TTTTTTTTCT TCCACTATCT TGCTTCCGGA ATTGACTCAG GACTTTCTGG
  ACCTTTTACA ATGAGGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8575881	WI_WGS_6_50977991	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6170339					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577543 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	995 bp downstream
Gm44054	predicted gene, 44054	323 bp downstream
Rr630048	regulatory region 630048	1613 bp distal
Rr630049	regulatory region 630049	1137 bp proximal
Rr630050	regulatory region 630050	1232 bp proximal