rs6169108 SNP Detail

Summary

• ID
  rs6169108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAAATGA TGAAACGCAA
  CGGAATTACA TTCAGGGGCT CAAGAGGCTA ATGACAATTT GCCAGAAGCA CTTTCCCACA
  GACCCATGGA AATGTGTGGA GTATAATGTG CTGTAAGATC TGTGTATGGT CTGGAACAGG
  AAGCCTCTGC CTGCAGCACA TGGACCTCTG GCCTTCCCAT AGTTACGAGG GAGAGATGAG
  Y
  TCCACAGTGG GCATCCACCT GGTGCAAATC TTGTTGACTT CAAGAGCTGT GTTGGTTTAC
  ACATGGTGTT GGACTGCAAA CTAAGTTTTG TGTCTTGGTC TTATTTGACT CAGATGAAAA
  ATTAAGTTCT CAAGATGTCC TGTGTAGTTT AAATGTAGAC AACCACCACA GAGGAGAGGG
  GGTTGAAGAT GACCAGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8574645	WI_WGS_6_50977756	WI	MOUSE	f	SNP							C		T
ss47873656	NES11694701	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6169108					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873656	NES11694701	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577308 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	1230 bp downstream
Gm44054	predicted gene, 44054	88 bp downstream
Rr630048	regulatory region 630048	1378 bp distal
Rr630049	regulatory region 630049	1372 bp proximal
Rr630050	regulatory region 630050	1467 bp proximal