rs6168899 SNP Detail

Summary

• ID
  rs6168899
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15183940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTACATG GGAGTTACTC
  CTTCCAGCTC ATACAAGAAT TTCATTTGCT TTGTTCAGAG TCTGATAAAA GAATGTTTAA
  AATGAACCTC TAAGTGTGTC CCTATTTCCT GAGAGCTTCC TGTATTTAAA TTTTGCTTTG
  AAAAATAACT GGAATAAACA TTGTTTTAAT GAGTGAAGTA TTTAACTACA AAAATGAAAA
  M
  GAATGCTAAC AGAATATTAA AACTGTTGTC TGTCGCAGGG CTGAGGAATA AGTGTCTTCA
  GTTTCTTTCT GAGAAGGTGG AGATCTTGTG TAGCCTCAGG GGTTGAAGGT GAAATGTGAA
  ATTTGCTGTA ATTACTTACC CAAAATGTCT GTATTAAAGG CTATTAGAAG CAGTTATTTT
  AAGTACTTCT TTATACATCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8574436	WI_WGS_6_14974830	WI	MOUSE	f	SNP							C		A
ss51242623	NES13801346	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		A		C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6168899					SNP	C	C	C	C	C	C	C	A	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242623	NES13801346	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15183940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626646	regulatory region 626646			633 bp distal
Rr626647	regulatory region 626647			216 bp proximal
Rr626648	regulatory region 626648			1075 bp proximal
Rr626649	regulatory region 626649			1576 bp proximal
Tssr54974	transcription start site region 54974			629 bp upstream
Tssr54975	transcription start site region 54975			690 bp upstream
Tssr54976	transcription start site region 54976			790 bp upstream
Tssr54977	transcription start site region 54977			813 bp upstream
Tssr54978	transcription start site region 54978			1274 bp upstream
Tssr54979	transcription start site region 54979			1429 bp upstream
Tssr54980	transcription start site region 54980			1498 bp upstream
Tssr54981	transcription start site region 54981			1515 bp upstream
Tssr54982	transcription start site region 54982			1641 bp upstream
Tssr54983	transcription start site region 54983			1666 bp upstream
Tssr54984	transcription start site region 54984			1698 bp upstream
Tssr54985	transcription start site region 54985			1714 bp upstream
Tssr54986	transcription start site region 54986			1917 bp upstream