rs6168644 SNP Detail

Summary

• ID
  rs6168644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127742351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAACACT GCCTGTTCGA TTGTACAAGC
  CGTTGGTAGG GTAAAACTAA ACTGTAAAGA TTTGAGTAGC ATGAGCGTCA CACAGTAAGT
  AAGCTTTTAG ACACTGACTG ACCTGGTCTC CCACTTTGCC TTTATCACTT TATTTAACCC
  Y
  AATCACAATT TTATTTAAAA AATAttaatt tattgagata ataatataat tacatcattt
  ccccttttcc tttccttccc tctaaacctt cccatatatt tctctttgct ctctttcaag
  tccatggcct tttttttcca ttaattttta                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8574180	WI_WGS_3_128433026	WI	MOUSE	f	SNP	T	C
ss135875930	ENSMUSSNP1455310	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320958544	CHEV_3_127651620	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6168644					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127742351 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	319 bp upstream
Rr584909	regulatory region 584909	82 bp distal
Rr584910	regulatory region 584910	171 bp proximal
Rr584911	regulatory region 584911	398 bp proximal
Tssr31619	transcription start site region 31619	1601 bp upstream