rs6168553 SNP Detail

Summary

• ID
  rs6168553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAATGCT CCCTGGCCTA
  TTGGTGTCAC TATGGTTGGT ATCCATGCCA GAACTGGCAG GGAAAAGATC TTTTCCAAGC
  ATGTTGCACA TGTTTTAAAT GATGAAACGC AACGGAATTA CATTCAGGGG CTCAAGAGGC
  TAATGACAAT TTGCCAGAAG CACTTTCCCA CAGACCCATG GAAATGTGTG GAGTATAATG
  Y
  GCTGTAAGAT CTGTGTATGG TCTGGAACAG GAAGCCTCTG CCTGCAGCAC ATGGACCTCT
  GGCCTTCCCA TAGTTACGAG GGAGAGATGA GCTCCACAGT GGGCATCCAC CTGGTGCAAA
  TCTTGTTGAC TTCAAGAGCT GTGTTGGTTT ACACATGGTG TTGGACTGCA AACTAAGTTT
  TGTGTCTTGG TCTTATTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss8574089	WI_WGS_6_50977664	WI	MOUSE	f	SNP								T						C
ss16376665	06.050.650	TWGNF	TWGNF-Mouse-2	f	SNP	C	C	T			C		T	C	C	C	C	C	C		T		C		C	C	C	T	C	C	C	C		C	T	C	T	T	C	T	T	C	C
ss45958551	mCV24540456	ABI	CRAMUS_MOUSE	f	SNP	C	C						T							T
ss47873652	NES11694696	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T					C			T		T		T				C	T		C		C
ss133182406	ENSMUSSNP6461076	ENSEMBL	ENSEMBL_Sanger	f	SNP		C													T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs6168553					SNP	C	C	T	T	T	C	T	T	C	C	C	C	C	C	T	T	T	C	T	C	C	C	?	?	C	C	C	C	C	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873652	NES11694696	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577216 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	1322 bp downstream
Gm44054	predicted gene, 44054	within coordinates
Rr630048	regulatory region 630048	1286 bp distal
Rr630049	regulatory region 630049	1464 bp proximal
Rr630050	regulatory region 630050	1559 bp proximal